Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs318871 | chr8:50849020 | C/T | 2.44E-5 | 216 | 1.87 | 9.25 | 10.13 | KM Plot |
| BLCA | rs318888 | chr8:50869198 | C/A | 1.52E-5 | 213 | 1.92 | 9.47 | 9.97 | KM Plot |
| BLCA | rs318903 | chr8:50890197 | C/T | 1.6E-5 | 216 | 9.97 | 9.25 | 0.98 | KM Plot |
| BLCA | rs318906 | chr8:50892363 | G/A | 1.6E-5 | 216 | 0.98 | 9.03 | 10.13 | KM Plot |
| BLCA | rs318910 | chr8:50900582 | T/C | 8.56E-6 | 215 | 0.98 | 9.47 | 9.97 | KM Plot |
| BLCA | rs3210631 | chr18:5237612 | G/A | 0.000123 | 208 | 8.6 | 15.13 | 5.85 | KM Plot |
| BLCA | rs34000267 | chr11:65098960 | GAA/G | 1.62E-13 | 208 | 8.7 | 12.7 | 2.17 | KM Plot |
| BLCA | rs34570447 | chr15:40774983 | AT/A | 2.65E-5 | 215 | 11.07 | 6.83 | 5.43 | KM Plot |
| BLCA | rs34914561 | chr8:50737521 | CTTA/C | 0 | 210 | 10.6 | 8.4 | 0.1 | KM Plot |
| BLCA | rs34998828 | chr18:5240532 | AT/A | 9.06E-5 | 210 | 9.05 | 12.43 | 3.48 | KM Plot |
| BLCA | rs355134 | chr3:8613844 | A/G | 7.13E-5 | 215 | 5.85 | 8.88 | 11.07 | KM Plot |
| BLCA | rs355227 | chr11:40976181 | C/T | 0 | 216 | 2.07 | 8.47 | 9.45 | KM Plot |
| BLCA | rs35545401 | chr18:5239566 | CTT/C | 4.41E-5 | 208 | 9.07 | 12.57 | 3.48 | KM Plot |
| BLCA | rs35842923 | chr11:65027808 | CTTTG/C | 0 | 215 | 8.87 | 12.4 | 2.73 | KM Plot |
| BLCA | rs35958802 | chr8:50714670 | C/T | 0 | 210 | 10.33 | 8.4 | 0.1 | KM Plot |